PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026710-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 484aa MW: 54441.4 Da PI: 5.7729

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026710-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.6	4.4e-30	38	122	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+qlea AUR62026710-RA 38 RWPRQETIALLKIRSDMDVIFRDSSLKGPLWEEVSRKMAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGK--ADGKTYRFFEQLEA 122 8******************************************************************96..66678*****85 PP
2	trihelix	108.7	3.7e-34	288	373	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++++++++ k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a AUR62026710-RA 288 RWPKAEVQALINLRTNLDQKYQENGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 373 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MATGMEDEEK TQSGSGIGIG GGGSGDLFEN DRSTGGNRWP RQETIALLKI RSDMDVIFRD 60 SSLKGPLWEE VSRKMAELGY HRSAKKCKEK FENVYKYHKR TKDGRTGKAD GKTYRFFEQL 120 EALEQHHLSM TTSSALPPLP QPVGQATTPQ QQRGQSQGPA QAAVPVTMDF FEKLMKEVID 180 KQEELQKRFL EAVEKREHDR VAREEAWKLQ EMARLNREHD FLVQERQVSL ASPTQPRPQT 240 QTIAQLPQQP PPQLQQALVV ANTNNGGDNS DFQKSSNGEN LLQASSSRWP KAEVQALINL 300 RTNLDQKYQE NGPKGPLWEE ISAAMRKLGY NRNAKRCKEK WENINKYFKK VKESNKKRPE 360 DSKTCPYFHQ LDALYRGRSK MEINPATTNA TPLTTYGQAQ QQPATTMAPI MAQPEQQWPL 420 QSHQDQAMED QGSENQDESE DDMDDEDDDD QGSGGYEIVA NNNVNAGSMT TSTTATRTAA 480 TAE*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MATGMEDEEK TQSGSGIGIG GGGSGDLFEN DRSTGGNRWP RQETIALLKI RSDMDVIFRD  60
SSLKGPLWEE VSRKMAELGY HRSAKKCKEK FENVYKYHKR TKDGRTGKAD GKTYRFFEQL  120
EALEQHHLSM TTSSALPPLP QPVGQATTPQ QQRGQSQGPA QAAVPVTMDF FEKLMKEVID  180
KQEELQKRFL EAVEKREHDR VAREEAWKLQ EMARLNREHD FLVQERQVSL ASPTQPRPQT  240
QTIAQLPQQP PPQLQQALVV ANTNNGGDNS DFQKSSNGEN LLQASSSRWP KAEVQALINL  300
RTNLDQKYQE NGPKGPLWEE ISAAMRKLGY NRNAKRCKEK WENINKYFKK VKESNKKRPE  360
DSKTCPYFHQ LDALYRGRSK MEINPATTNA TPLTTYGQAQ QQPATTMAPI MAQPEQQWPL  420
QSHQDQAMED QGSENQDESE DDMDDEDDDD QGSGGYEIVA NNNVNAGSMT TSTTATRTAA  480
TAE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-74	Trihelix family protein