PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026711-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 396aa MW: 45290.3 Da PI: 8.8054

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026711-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.6	3.5e-23	107	203	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +W +++v++Li+a +++ e+ +g+ kk++W+++sk+m+ergf +sp+qC++k+++lnkrykk++e+ +k+ +++++++ + +d AUR62026711-RA 107 KWNNSMVKLLITAISYLSEDAFfEGSqgrrkyltlHKKGKWKSISKVMAERGFFVSPQQCEDKFNDLNKRYKKLNEILGKGtSCQVVEKPAILDM 201 7************98776552443566778888********************************************66999999999998 PP trihelix 85 le 86 ++ AUR62026711-RA 202 MD 203 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MMPGGGSVYG GSELQGSMRV NHHQNPRTLQ PGQGLMNHPS SLHEILPLKM GQGHSCDQPN 60 SMADYNKGER VKNSQTDEED HSSNGEGMDG QNDPSKGKNV PQWHRVKWNN SMVKLLITAI 120 SYLSEDAFFE GSQGRRKYLT LHKKGKWKSI SKVMAERGFF VSPQQCEDKF NDLNKRYKKL 180 NEILGKGTSC QVVEKPAILD MMDHISEKEK DEVRKILSSK HLFYEELCSY HNNNRLHLPP 240 DPALQQSLQL ALRSRDDNGA AYALSGDPSK RMKQGLSLEN FNFRPQSTQD FSKGFQLQPQ 300 NPCADMHPPL PESQKAALLQ NQWLKSQALQ LEEQKIHIES EALQLEKQRL KWQRFCKRKD 360 QELEKLKMEN DRMKLENDCI ALELKRMEMS TNSKN*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MMPGGGSVYG GSELQGSMRV NHHQNPRTLQ PGQGLMNHPS SLHEILPLKM GQGHSCDQPN  60
SMADYNKGER VKNSQTDEED HSSNGEGMDG QNDPSKGKNV PQWHRVKWNN SMVKLLITAI  120
SYLSEDAFFE GSQGRRKYLT LHKKGKWKSI SKVMAERGFF VSPQQCEDKF NDLNKRYKKL  180
NEILGKGTSC QVVEKPAILD MMDHISEKEK DEVRKILSSK HLFYEELCSY HNNNRLHLPP  240
DPALQQSLQL ALRSRDDNGA AYALSGDPSK RMKQGLSLEN FNFRPQSTQD FSKGFQLQPQ  300
NPCADMHPPL PESQKAALLQ NQWLKSQALQ LEEQKIHIES EALQLEKQRL KWQRFCKRKD  360
QELEKLKMEN DRMKLENDCI ALELKRMEMS TNSKN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	4e-94	Trihelix family protein