PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027033-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 20733.4 Da    PI: 7.3436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027033-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.9e-232270149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++ie+k ++qvtf+kRr+g++KKA+EL++LC+aevav+ fs  gk++ +
  AUR62027033-RA 22 EKIEDKARKQVTFTKRRKGVFKKASELCTLCNAEVAVLTFSGAGKVFSF 70
                    57********************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MSMAEESEVK SKPLGKRKIA IEKIEDKARK QVTFTKRRKG VFKKASELCT LCNAEVAVLT  60
FSGAGKVFSF GHPSADEVIN RYINGSKSSS SSLSLDSSSV TNEHVGKEKL LHGATCSDEQ  120
DLCWWQKPVE GLGLEELEKI MTSLIELMNN VASKIGNCWS NNNNVGSSAN TPKSGLDLNE  180
AYSPKSNGAD E*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29M-type_MADS family protein