PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027088-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28410.3 Da PI: 9.7301

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027088-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85	4.5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n + rqvtfskRr g+lKKA ELSvLCdaev iifsstgkly+++s AUR62027088-RA 9 KRIDNATSRQVTFSKRRSGLLKKARELSVLCDAEVGAIIFSSTGKLYDFAS 59 79***********************************************86 PP
2	K-box	69.8	8.8e-24	91	183	6	98
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + s ++++ + +q+e+a+L+++++ Lq+++R+l+G++L+ Ls+k++q+Le+qLe+slk++R kK +++++ el k+ + ++++n +L+k++ AUR62027088-RA 91 QLSSAASELKFWQREAANLRQQLQYLQESHRKLMGQELSGLSIKDMQNLETQLETSLKSVRMKKGAIIHQHNIELYKQLNLVKQQNSELQKQV 183 233678899*********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGKIVIKR IDNATSRQVT FSKRRSGLLK KARELSVLCD AEVGAIIFSS TGKLYDFAST 60 KNSDIDILNA TFSMKMVIER YNKMKEENNH QLSSAASELK FWQREAANLR QQLQYLQESH 120 RKLMGQELSG LSIKDMQNLE TQLETSLKSV RMKKGAIIHQ HNIELYKQLN LVKQQNSELQ 180 KQVCTTEETN QIQQHPHMSY NVNNDSHMNT AINLQLSQPE QHNDETSAKN MKLCVTPNAK 240 PSITTDNST*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-78	MIKC_MADS family protein