PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027090-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22105.2 Da    PI: 6.3054
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027090-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-25954146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    +ri+n + rqvtf+kRr+g++KKA+ELS+LCdaev +iifsstgkl
  AUR62027090-RA  9 ERIDNLTSRQVTFTKRRKGLFKKAKELSILCDAEVGIIIFSSTGKL 54
                    69*******************************************9 PP
2K-box71.42.7e-24531361598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + ++ e++ L++++e+L+++ R+llGedL++Ls+++L+ Le qLe + k iRs+K+e++ ++i+el k e  +++en++L+kk+
  AUR62027090-RA  53 KLWKVEAEGLRQQLEELRKNSRQLLGEDLSELSIEHLETLEAQLEMGTKAIRSRKEEIFQNKIQELNKTEILVHQENMELHKKI 136
                     56999*****************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGRGKITIER IDNLTSRQVT FTKRRKGLFK KAKELSILCD AEVGIIIFSS TGKLWKVEAE  60
GLRQQLEELR KNSRQLLGED LSELSIEHLE TLEAQLEMGT KAIRSRKEEI FQNKIQELNK  120
TEILVHQENM ELHKKINLMR QEMIELQKKV ELNDTNYSIQ VSGGQGRDDQ EGGISSGGAA  180
SAYDTYDPIE LKLS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-54MIKC_MADS family protein