PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027113-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 162aa MW: 18889.8 Da PI: 9.4889

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027113-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.7	2.4e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g +KKA+ELS+LCdae+a+i+fss++klye+s+ AUR62027113-RA 9 KKIENIAARQVTFSKRRKGFIKKAQELSTLCDAEIALIVFSSSDKLYEFST 59 68***********************************************96 PP
2	K-box	36.5	2e-13	92	144	20	72
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 + a + ke+e ++e+R+l+GedLe L ++eL ++e+q+ek+ +++R K AUR62027113-RA 92 DCAVVSKEVEVKRQELRQLKGEDLEGLGFEELVKVERQIEKAFTRVRRMKVGK 144 5666788899999**********************************999655 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MVRSRIQIKK IENIAARQVT FSKRRKGFIK KAQELSTLCD AEIALIVFSS SDKLYEFSTS 60 RVTRVIQRYM RHTEKLPDDE QLDPYPVFLE DDCAVVSKEV EVKRQELRQL KGEDLEGLGF 120 EELVKVERQI EKAFTRVRRM KVGKLASEFL PSLHNTVHDF W*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	4e-33	MIKC_MADS family protein