PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027653-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27380 Da PI: 9.2833

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027653-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.3	1.5e-31	27	76	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ AUR62027653-RA 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 76 79***********************************************8 PP
2	K-box	110.7	1.5e-36	98	191	8	100
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ea+a+++qqe+akL+ +i++ +++Rh++Ge+L+sLs+keL++Le++Lek++++iRskKnell+++ie +qk+e el+++n+ Lr+++ e AUR62027653-RA 98 GsVAEANAQYYQQEAAKLRGQIKTATENNRHMMGEGLSSLSMKELKNLETKLEKGINRIRSKKNELLFAEIEFMQKREIELHNNNQFLRARISE 191 3499*************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MEFPTQVMEE GSPSSQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSSRG RLYEYANHSV KGTIDRYKKA CSDQTGAGSV AEANAQYYQQ EAAKLRGQIK 120 TATENNRHMM GEGLSSLSMK ELKNLETKLE KGINRIRSKK NELLFAEIEF MQKREIELHN 180 NNQFLRARIS ENERAQQSMS LMPGGSDYDL VPSQSFDSRN YFQIELAGAE SDQVNSLMNG 240 I*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-95	MIKC_MADS family protein