PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027858-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 350aa    MW: 39583.4 Da    PI: 5.7348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027858-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.4e-222876149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ri ++++++vtfskRr g++KKA+EL+ LC++e av+ fs++gkl+ +
  AUR62027858-RA 28 ERIADQTRKHVTFSKRRLGLFKKASELCALCGVEMAVLTFSERGKLFCF 76
                    69********************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MANNKETEDG KKEVIRTRSN GRRKIRIERI ADQTRKHVTF SKRRLGLFKK ASELCALCGV  60
EMAVLTFSER GKLFCFGHPN SDNIIRRYLN LGSFYDEPAG FDLMVDEQNR QRDEIKRKTD  120
EKKRATNRNV VEKKKVGEPA DDEKNCQSSD TNEGCGNWWE EAAVDEMGLC ELEQFKASLM  180
ELRKNVAKKA EELTENSLLY SSCQAGNVVI DQLDTNQNLS NDVGCNSSGS STIGNMDYWD  240
NNVRDFENPV LGMMSNSSHL IAGEDKVANV DVSQSYKFRF MNEVHMMNEF DLEGSRDVSH  300
FSNLSQRMGV FNFAVMNQYH QAPMMEDSKG GITNPGLMPQ GFKFEGGHL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31M-type_MADS family protein