PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027882-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 22923.9 Da PI: 4.9376

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027882-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.8	2.6e-27	19	69	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr gi+KKAeELSvLCda++a+iifs tgkl+++s+ AUR62027882-RA 19 KKIDNITARQVTFSKRRRGIFKKAEELSVLCDADIALIIFSATGKLFDFSN 69 68***********************************************85 PP
2	K-box	28.4	6.9e-11	97	158	15	76
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 + + +lakL++e+ +e+R+l GedL+ +l+eL qLe+ Le sl+++ ++K+ l ++ AUR62027882-RA 97 QLENSNLAKLNSEVADKNQELRKLRGEDLQGVDLEELLQLERILEGSLSRVLETKMIELSQE 158 445667888999998888**********************************9998666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MAGRSSLSSS MAREKIKIKK IDNITARQVT FSKRRRGIFK KAEELSVLCD ADIALIIFSA 60 TGKLFDFSNS RMKDILARYS AHANYEKKEE EPFLELQLEN SNLAKLNSEV ADKNQELRKL 120 RGEDLQGVDL EELLQLERIL EGSLSRVLET KMIELSQERK PALLLDQSDT STIHEEGQYS 180 SESITNGGPP LTEDDSSDTS LKLG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	7e-63	MIKC_MADS family protein