PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027919-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 218aa    MW: 23342.4 Da    PI: 5.1891
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027919-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42491481100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++hk+FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela
  AUR62027919-RA  49 PCAACKILRRRCADKCVLAPYFPPTDPLKFTIAHKVFGASNIIKLLQDLPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVSELQAELA 143
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  AUR62027919-RA 144 KAKAE 148
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MEGSTSDIVM SSPVGGGASP CSPQSPNSPP SCGHGHQTSS GSPPVIMSPC AACKILRRRC  60
ADKCVLAPYF PPTDPLKFTI AHKVFGASNI IKLLQDLPES QRADAVSSMV YEANARLRDP  120
VYGCAGAICQ LQKQVSELQA ELAKAKAEVV NMQCQQANLL AFICMEMTHS QDVVMPNTTS  180
SSSPPQDPYE TSPNNNSFLN FYDDNNTLSS VWEPLWT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-66LBD family protein