PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027953-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 1535aa MW: 166462 Da PI: 6.1773

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027953-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.6e-09	742	783	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE el+ d + +G++ +++I++ + ++t +c+++++k AUR62027953-RA 742 PWTFEEKELFMDKLATHGKD-FRKISSFLD-HKTTADCIEFYYK 783 8***************99.*****.*********98 PP
2	Myb_DNA-binding	22	3.8e-07	955	995	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT +E l+v+a+ +G++ + I+r++ +++ qck ++ AUR62027953-RA 955 DWTDDEKILFVQAFLSHGKD-FLMISRRVR-TKSSDQCKVFFS 995 6***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1535 aa Download sequence
MLNLCFASGL GEDLVICKGH GKQGGWHMYP EDHGYSTPRS ADRFMDDNNM FRPSGMRGDG 60 RYGRFYRENR PSFGQRDWRG QSWEGNHHHG GPANGVGRPH TVNDQRAVGD SPVRASHPHS 120 DPRDQIHAKE QVDKTGDANG SSSGQKVDKE NLLGSLDWKP LKWSRSGSLT SRGSGFSHSS 180 SSKSIGGESS DVKCDLPPKK VTPVQSPSGD AVACAPSVTP SEETSSRKKP RLGWGEGLAK 240 YEKKKVDGPE DNVKSNAISA SNVEPSHSLP SSLVVKSPKM SGFSDCSSPA TPSSFACSSS 300 PGLEDRTYGK AVDAGGDASN FSVSSMPVHE SQLEGSHFRL EKLELKSVAN LGSLLNELLQ 360 ADDQCSMDSG FMRSSAFNKL LLWKGDISRT LELTETEIDS LENELTSLKA ETDRSFHRPA 420 SSNSGPADYK DGPSDCQTVF PRPHPLEVVS NGEMISEDRL PCDDAGEVQA ESKDEDIDSP 480 GTATSKFVEP LVQKSISYDV CKNSSGESGF VESTKSAMDL GTSCQGHDRS VVQVNNIIAI 540 DIENPGVCDK KVDSICDTVI ASNKELANRA SEGLLKLLPC SDSMVANRAS CIPADSTMKE 600 KFLRKKRSLR FKERVISLKY RAFHHLWKED LRLLSLRSHR AKPQKKPDPS SRILQVGNQK 660 NRSSIRSRFT SPAGSLSLVP TTEIINFTGK LLSDSQAKVY RNGLKMPAMI LDEKEKMSRF 720 LSNNGLVEDP CAVEKERSLI NPWTFEEKEL FMDKLATHGK DFRKISSFLD HKTTADCIEF 780 YYKNHKSECF EKIKKLEVKK IGKPISANTY LVTSGKKWSR EMNAASLDIL GAASVIAAQA 840 DQALETSKLL LGKSSNKRSR GSDGIIEESS SLFGAEDERE TAAADVLAGI CGSLSSEAMS 900 SCITSSVDPG EGNPERKHQK VGSSIRRPLT PEVTQNVDDD DTCSDESCGE MDPVDWTDDE 960 KILFVQAFLS HGKDFLMISR RVRTKSSDQC KVFFSKARKC LGLDILPSGS GGNHASDDTN 1020 GGGSDTEDAG IVETGSIVCS DKSGSRIDED LLQVNQDVSK PDVTIELNAL EENCGPGQLD 1080 HKDSDLVLKD LVPQGHLADV SDPLACCGMV DVMVKDSATA VDTKRPEFHL MIQDDKTKVN 1140 TLLCRSATDV ACHDSGVAVD MEAASGISDS ISEVHVSSAP VKFVNPRDGL FKSSSVGNVH 1200 HLLSGSSMMN QSELCRDLKG FPLDLSVKSE LHDVCTVGDE SIDQSYQRSF LRKCSRAVSH 1260 NSVAELPLLQ QSEDELGSSC SSKTEKSCRN GNVKLFGKIL SKTSSVDKPT SNAVLHDEKA 1320 KHHSNQDVNG NSMSFADDHN SFLGLENVPI RSYGFWDGTK IQTGFPTLPD SALLLAKYPG 1380 AFSNYSISSP KSEQQPLPAA VNGNECNMNG ACVFSPREFS SSNGGNVIDY TILRNQDGLQ 1440 PFRLDMKKRP EDVVFPEVQR NGFESLKQQG KGVVKLNVVQ GGDILGGSCS GISDPVAALK 1500 LHYASQQYGG VGGHSVNGIV REEPWRSQGG DVGR*

Sequence ? help Back to Top

Protein Sequence Length: 1535 aa Download sequence

MLNLCFASGL GEDLVICKGH GKQGGWHMYP EDHGYSTPRS ADRFMDDNNM FRPSGMRGDG  60
RYGRFYRENR PSFGQRDWRG QSWEGNHHHG GPANGVGRPH TVNDQRAVGD SPVRASHPHS  120
DPRDQIHAKE QVDKTGDANG SSSGQKVDKE NLLGSLDWKP LKWSRSGSLT SRGSGFSHSS  180
SSKSIGGESS DVKCDLPPKK VTPVQSPSGD AVACAPSVTP SEETSSRKKP RLGWGEGLAK  240
YEKKKVDGPE DNVKSNAISA SNVEPSHSLP SSLVVKSPKM SGFSDCSSPA TPSSFACSSS  300
PGLEDRTYGK AVDAGGDASN FSVSSMPVHE SQLEGSHFRL EKLELKSVAN LGSLLNELLQ  360
ADDQCSMDSG FMRSSAFNKL LLWKGDISRT LELTETEIDS LENELTSLKA ETDRSFHRPA  420
SSNSGPADYK DGPSDCQTVF PRPHPLEVVS NGEMISEDRL PCDDAGEVQA ESKDEDIDSP  480
GTATSKFVEP LVQKSISYDV CKNSSGESGF VESTKSAMDL GTSCQGHDRS VVQVNNIIAI  540
DIENPGVCDK KVDSICDTVI ASNKELANRA SEGLLKLLPC SDSMVANRAS CIPADSTMKE  600
KFLRKKRSLR FKERVISLKY RAFHHLWKED LRLLSLRSHR AKPQKKPDPS SRILQVGNQK  660
NRSSIRSRFT SPAGSLSLVP TTEIINFTGK LLSDSQAKVY RNGLKMPAMI LDEKEKMSRF  720
LSNNGLVEDP CAVEKERSLI NPWTFEEKEL FMDKLATHGK DFRKISSFLD HKTTADCIEF  780
YYKNHKSECF EKIKKLEVKK IGKPISANTY LVTSGKKWSR EMNAASLDIL GAASVIAAQA  840
DQALETSKLL LGKSSNKRSR GSDGIIEESS SLFGAEDERE TAAADVLAGI CGSLSSEAMS  900
SCITSSVDPG EGNPERKHQK VGSSIRRPLT PEVTQNVDDD DTCSDESCGE MDPVDWTDDE  960
KILFVQAFLS HGKDFLMISR RVRTKSSDQC KVFFSKARKC LGLDILPSGS GGNHASDDTN  1020
GGGSDTEDAG IVETGSIVCS DKSGSRIDED LLQVNQDVSK PDVTIELNAL EENCGPGQLD  1080
HKDSDLVLKD LVPQGHLADV SDPLACCGMV DVMVKDSATA VDTKRPEFHL MIQDDKTKVN  1140
TLLCRSATDV ACHDSGVAVD MEAASGISDS ISEVHVSSAP VKFVNPRDGL FKSSSVGNVH  1200
HLLSGSSMMN QSELCRDLKG FPLDLSVKSE LHDVCTVGDE SIDQSYQRSF LRKCSRAVSH  1260
NSVAELPLLQ QSEDELGSSC SSKTEKSCRN GNVKLFGKIL SKTSSVDKPT SNAVLHDEKA  1320
KHHSNQDVNG NSMSFADDHN SFLGLENVPI RSYGFWDGTK IQTGFPTLPD SALLLAKYPG  1380
AFSNYSISSP KSEQQPLPAA VNGNECNMNG ACVFSPREFS SSNGGNVIDY TILRNQDGLQ  1440
PFRLDMKKRP EDVVFPEVQR NGFESLKQQG KGVVKLNVVQ GGDILGGSCS GISDPVAALK  1500
LHYASQQYGG VGGHSVNGIV REEPWRSQGG DVGR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-166	MYB family protein