PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027988-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 1017aa    MW: 111714 Da    PI: 6.5689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027988-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.6e-22136237199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  AUR62027988-RA 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDSVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 227
                     99*****************************9445444.38************************************************..5689 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  AUR62027988-RA 228 QHLLLGIRRA 237
                     999****997 PP
2Auxin_resp122.53e-40262345183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  AUR62027988-RA 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAIYgQQVSPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 345
                     79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    
MKSTTNTPAN TASQTTNNSP SSEGEKKTIN QELWQACAGP LVNLPAAGTH VVYFPQGHSE  60
QVAASLKKDV DGQIPNYTNL PAKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKEALL  120
RSDLSLKAHK PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDSVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQHL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAIYGQQ  300
VSPGMRFRMM FETEDSGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SVWEIEPVTA PFFICPPPFL RPKRPRLPGM PDDESDVDNP FKRTMPWLGD DPHALTGLSL  420
MQWMNMPQNQ SLANPMQANF LNTLPGTLQS LPGADLSRQL GFTAPLMSQQ NNLQLNAQSP  480
VQSVQQLDQL QKSAEALNPL SSLIQSQQQL CDVSQQSSMH NLINQSLSSN HVQSQLHSLL  540
SQQSALQQIN HVNQLQELQR SQSDASQSFS RALPSSQMMD MPQAQMKPLP QPQVMPQQIS  600
RSSSLTASHF SQTPQVPKLP QQQSGVMPEL HGPAGVALNP MSNHPSTAVS SSFVGAAAGG  660
HSVLTDDIPS CSTSPSTNNG PIVTQTVMNN RSHRNYALGE GINQSNLLSS NSLETMAAHN  720
SFQELHQKAA VKPSVNITKV ESQGHLTRQT YQSIPMDYLD TSSATSASLS QNDIVIQNNP  780
LANPQSSLLG DTGHDVEVQA DVRNNFHAGA SINGQLGTSL VSDTMLTKNL PRSDKDFSNN  840
VSSGCMLSTY ENSKDAQQEL SSSMVTQSFG VPDVAFNSID SALSDGSFMN RGAWAPPQPY  900
QRLRTYTKVY KRGAVGRSID VTRYSGYEEL KQDLARMFGI EGQMEDRGRV GWKLVYVDHE  960
NDVLLVGDDP WDDFVNCVRC VKILSPQEVQ QMSLDEDFGN ASLQNQTCSS SDGGNV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein