PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62028286-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 947aa    MW: 104225 Da    PI: 6.3836
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62028286-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d+++++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F   ++++
  AUR62028286-RA 125 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPCQ-ELMAKDLHNQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFI--RDEK 216
                     99*****************************98888885.*************************************************..5577 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  AUR62028286-RA 217 SHLLLGIRRA 226
                     8889999997 PP
2Auxin_resp123.71.3e-40251333183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras++eFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g+sdldpvrW+nS+Wr+L+
  AUR62028286-RA 251 AAHAATNNSPFTIFYNPRASPAEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGISDLDPVRWKNSQWRNLQ 333
                     79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    
MKAPSNGLMA NPGEEGRAIN SELWHACAGP LVAVPPVGSL VVYFPQGHSE QVAASMQKET  60
DGIPSYPNLP SKLICMLHSV TLHADPETDE VYAQMTLQPV NKYDRDALLA SEMALKQSRQ  120
PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PCQELMAKDL HNQTWTFRHI  180
YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL FIRDEKSHLL LGIRRANRQQ PALASSVISS  240
DSMHIGILAA AAHAATNNSP FTIFYNPRAS PAEFVVPLAK YNKAMYTQVS LGMRFRMMFE  300
TEECGVRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERPSRVSI WDIEPVVTPF  360
YICPPPFFRP KFPKQPGMPD DDSDMDSMFK RGMPWLGDDF GMKDAASSIF PGLSLVQWMN  420
MQQNNQVPGA QSGIFPSMLS ASALHGGLGT DDPSKLLNFQ TPSMSMPNLQ FNKAGQHNQL  480
HHQQLQVGNT QCTPNIQPNK DSVHSTSLAP DMQFQQQTEQ QSSALQRFQQ QQQAQMQHSQ  540
VQPQVTAQQH APQPNQHMLQ RSTSQYQLPQ VGVSTMSTSP LMNSPAVSAV QLQGMQKTGA  600
IVRSLSCPTD GDAPSCSTSP STNNCQIPQS NFLNRNQPAR NVLVEHSVEP NSNMVQDLQE  660
KSDLRIKNEI PNSKVIEPSR INGIITDPLE ASSSVTSYGL DASGLHQNLS LPSFGLDGDV  720
QSHPRNNHPI STAMDDLTPD TFLSRGFDSG KELHNLLSSY NGAPRDIETE LSAAGMSPQS  780
FGVPNMPFKS GCSNDVAAIN DPAGLGGGIW PSQAPRMRTY TKVQKRGSVG RSIDVTRYKG  840
YEDLRRDLAR MFGIEGQLED PQRTDWKLVY VDHENDILLV GDDPWEEFVN CVLSIKILSS  900
VEVQQMSLDG DLGSGPIPNQ ASSGTDSGNN AWRGPFDDHS AASFNR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein