PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62028683-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HB-PHD

Protein Properties

Length: 860aa MW: 93327.6 Da PI: 4.4635

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62028683-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.5	9.7e-13	703	745	10	52
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L e+F++n+yp+++++e+LA++lgLt +V WF N R AUR62028683-RA 703 AVTKRLYEAFKENQYPDRQAKEKLANELGLTAYKVDKWFGNAR 745 66899************************************99 PP
2	PHD	40.6	5.7e-14	396	451	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C + +++++lCdg C++ fH++Cl+++l +ee+p g wlC+ C++k AUR62028683-RA 396 FCAKCASkdLSPGNDIILCDGiCERGFHQYCLDPPLLTEEIPPGdeGWLCPACDCK 451 699999966666******88****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence
MAEFTSSGKF GNASIPKQMI EEKQVFSYQS SINEPIMAEL QMGNQNDTIA KEKPVVELSK 60 NEVGSIGNQL GEPVQMNNVV SDKIPLEGVD VSLRDENESE NQREGGRESV KCEQPGLKER 120 DDSEAGPDSV KAEQNAESKD DTNVLFEMEG VQISLAEDEE NLISDMLKSS GKTEQNECDA 180 CDAEVIPNAQ TTPPGVACDT EVIPNAQTTP SPEKAGDKVR IVVLAAPAYD ATEKPIRGRR 240 PKAVVASEKK TSRQLSAASK RDLRSRSNEN TKDPEPSINL ETTKGSTGRR GRKKGKGKDG 300 KSDDAFSKMR KHLRYLLHRI HYEQNLLDAY SSEGWRGQSI EKLRPEKELQ RAKADINRSK 360 LKIRDLFQRL DSMLAEGKFP ETLYDADGLI DSEDIFCAKC ASKDLSPGND IILCDGICER 420 GFHQYCLDPP LLTEEIPPGD EGWLCPACDC KLDCVDLLND SQGTRLAIEN KWEKVFPEAV 480 SAMVSKELDD VMGLPSDDSE DNEYNPDGTD DDANAEGNES SSAKSDSDES EDDDFSSVSE 540 DLGPKRGAEQ NLGLPSDDSE DDDFNPDAAN VNEGVEPESS SSDFTSASED LGAAIGDDGT 600 SDINEPSLPL DLEQDLGESS PLTSKRCVQR LDYKKLYDVI SNMGASASAD GTCGSGASQR 660 RGRPKVNRQA ANGSPVPLQE SPRKKSPGGS SKKRPPYNRL GEAVTKRLYE AFKENQYPDR 720 QAKEKLANEL GLTAYKVDKW FGNARWSLHH HPSRVEASMT RVVSNSSSPH SVACIGGESA 780 LADTNTAVPE CGTADTSTLD VASGKISSPP KSGMNVEGNQ SMLETSKAEV SKEGTQNESL 840 ETAEASQGKL PRKRRKSGA*

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence

MAEFTSSGKF GNASIPKQMI EEKQVFSYQS SINEPIMAEL QMGNQNDTIA KEKPVVELSK  60
NEVGSIGNQL GEPVQMNNVV SDKIPLEGVD VSLRDENESE NQREGGRESV KCEQPGLKER  120
DDSEAGPDSV KAEQNAESKD DTNVLFEMEG VQISLAEDEE NLISDMLKSS GKTEQNECDA  180
CDAEVIPNAQ TTPPGVACDT EVIPNAQTTP SPEKAGDKVR IVVLAAPAYD ATEKPIRGRR  240
PKAVVASEKK TSRQLSAASK RDLRSRSNEN TKDPEPSINL ETTKGSTGRR GRKKGKGKDG  300
KSDDAFSKMR KHLRYLLHRI HYEQNLLDAY SSEGWRGQSI EKLRPEKELQ RAKADINRSK  360
LKIRDLFQRL DSMLAEGKFP ETLYDADGLI DSEDIFCAKC ASKDLSPGND IILCDGICER  420
GFHQYCLDPP LLTEEIPPGD EGWLCPACDC KLDCVDLLND SQGTRLAIEN KWEKVFPEAV  480
SAMVSKELDD VMGLPSDDSE DNEYNPDGTD DDANAEGNES SSAKSDSDES EDDDFSSVSE  540
DLGPKRGAEQ NLGLPSDDSE DDDFNPDAAN VNEGVEPESS SSDFTSASED LGAAIGDDGT  600
SDINEPSLPL DLEQDLGESS PLTSKRCVQR LDYKKLYDVI SNMGASASAD GTCGSGASQR  660
RGRPKVNRQA ANGSPVPLQE SPRKKSPGGS SKKRPPYNRL GEAVTKRLYE AFKENQYPDR  720
QAKEKLANEL GLTAYKVDKW FGNARWSLHH HPSRVEASMT RVVSNSSSPH SVACIGGESA  780
LADTNTAVPE CGTADTSTLD VASGKISSPP KSGMNVEGNQ SMLETSKAEV SKEGTQNESL  840
ETAEASQGKL PRKRRKSGA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-57	HB-PHD family protein