PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62028826-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Whirly
Protein Properties Length: 212aa    MW: 23528.8 Da    PI: 8.1883
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62028826-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.31.9e-56121341126
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+v+++ p+f+ ldsg++k++r+G +ll++a+a+++r+ydW++kq+f+ls+te+++lv+l+ kesceffhdp +++s+eGkvrk+lk
  AUR62028826-RA  12 SIYKGKAALTVEPKSPEFVPLDSGAFKVSREGYVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVSLGEKESCEFFHDPNKGKSDEGKVRKVLK 106
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPv 126
                     vePlpdGsG+f+nl+        +++f v  
  AUR62028826-RA 107 VEPLPDGSGYFFNLNHMPA---NEKTFAVIN 134
                     **************86655...445555544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MGFPPKVFVG HSIYKGKAAL TVEPKSPEFV PLDSGAFKVS REGYVLLQFA PAAGVRQYDW  60
SRKQVFSLSV TEIGSLVSLG EKESCEFFHD PNKGKSDEGK VRKVLKVEPL PDGSGYFFNL  120
NHMPANEKTF AVINTLTAKA VLNCVQNKLL NLDENVYIPI SKAEFAVLVT AFNFVLPYLL  180
GWNVFADNIK PDDSNRINSS NTRTGDYEWN R*