PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62028906-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27657.4 Da    PI: 8.8572
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62028906-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  AUR62028906-RA  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box97.22.5e-32871731298
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     a + s+qqe+ kLk+++e+Lqr++R+l+GedL++Ls keL++Le+qL+ slk+iRs +++ +++q+ +lq+ke++l+e+n++L+++l
  AUR62028906-RA  87 ALEISSQQEYLKLKARYESLQRTHRNLMGEDLGPLSSKELESLERQLDMSLKQIRSIRTQCMVDQLTDLQRKEHMLNEANRTLKQRL 173
                     445689******************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PSMLKTLERY QKSNYGPPDN TVSTREALEI SSQQEYLKLK ARYESLQRTH RNLMGEDLGP  120
LSSKELESLE RQLDMSLKQI RSIRTQCMVD QLTDLQRKEH MLNEANRTLK QRLIEANQAS  180
SLQWGNVQDV GYGRQPAQPH DDTFFHPLDC EPTLQMGYQP DPVSAAAAAG ANANNFLPNW  240
LP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-107MIKC_MADS family protein