PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029151-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 267aa MW: 29132.1 Da PI: 6.6434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029151-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H AUR62029151-RA 105 YECKTCNKAFPSFQALGGHRTSH 127 99*********999998888777 PP
2	zf-C2H2	13.2	0.00026	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H AUR62029151-RA 189 HECSICGSEFPSGQALGGHMRRH 211 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MESTEEEFSS FTTKGRRTKR QRSLLAATAS SNNNSYGSSS SGASPSDEHD IMSEVTTTEE 60 EDMANCLILL AQGIERKVSH IIKSKTKINN NNNTSTTSTS NISTYECKTC NKAFPSFQAL 120 GGHRTSHKKI KPSTPTVVVP PARSPDTIDT VLHDRDRSLD DLDVAEFTSK KYFLVQSNNN 180 NDASKARVHE CSICGSEFPS GQALGGHMRR HRAAATTTTA TTTIATSPIT PDDQDEQQHN 240 IEVADHMDTK FVHVLPTPTP LVDCHY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-30	C2H2 family protein