PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029308-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 230aa MW: 25276.1 Da PI: 7.13

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029308-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H AUR62029308-RA 68 FSCNYCRRKFFSSQALGGHQNAH 90 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MAHPNSNSST KLEDESEDDN QEIGQNPISL DLNLCFKPNK ESSYENSGDG DDKMTGEEII 60 PPNNNRVFSC NYCRRKFFSS QALGGHQNAH KRERTIAKRA MRIGALADRH VSLASLPLHG 120 SLSSSPGCSF PSRPSIDIQA HHGSMMMMMH PHLHPSTVPH QNQQPHYNGY SHLLHHSEQR 180 LPAHHAGGDG PAAKFEGQNG YLLGGVPVFS AVPFWPGSFR QCLVSYDQS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	8e-22	C2H2 family protein