PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029664-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CPP

Protein Properties

Length: 565aa MW: 61378.1 Da PI: 8.3182

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029664-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.4	7.9e-15	88	127	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ ++ AUR62029664-RA 88 KQKQCNCKNSRCLKLYCECFASGIYCDG-CNCINCHNNVDH 127 89************************.******9875 PP
2	TCR	51.6	1.9e-16	172	211	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a+ Cs++CkC dCkN e AUR62029664-RA 172 KHNKGCNCKKSGCLKKYCECFQANILCSDNCKCIDCKNFE 211 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MEIGEMAAVT AAAPSSSSSE FAPKKLARQL DFTPNLLAPV HQSPVQAVQR AVHPAPRPPA 60 LAATVKPESQ SPQPQATVPE VKDGTPKKQK QCNCKNSRCL KLYCECFASG IYCDGCNCIN 120 CHNNVDHEPA RQEAIGATLE RNPNAFRPKI ASSPHGSRMN KPETGPAQLV GKHNKGCNCK 180 KSGCLKKYCE CFQANILCSD NCKCIDCKNF EGSEERRALF HGSSYNTMIY QAANAAINGA 240 IGSSGPSGYS NSPGSRKRRS QELFIGMYNN QPFYRNAHYM QGNHVKSAPP TLPSEPPATR 300 GTSSPAASKI TYRSPLAGVI QPQDVKELCS LLVIVSKEAA KTFVDKNRNI DYQEKDESRT 360 HGSFEIKEKV NEQKEYKMEK GALQNHSTDE QAVRICPESS GLDESDALNG RPASPGTMAL 420 MCYEQETVLM EESARGPTVD SQNTAPDTSS EQKVTDCFVK QERAVLTNFR DFLNRLITCG 480 SIKETMCSSQ VRDEAGNQGP SLKTDAFNNR HLSNGVIKPF ASMANHTPAT RTGGVAFGST 540 NAFNQHMGLP IENGMLKPKT EKTV*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MEIGEMAAVT AAAPSSSSSE FAPKKLARQL DFTPNLLAPV HQSPVQAVQR AVHPAPRPPA  60
LAATVKPESQ SPQPQATVPE VKDGTPKKQK QCNCKNSRCL KLYCECFASG IYCDGCNCIN  120
CHNNVDHEPA RQEAIGATLE RNPNAFRPKI ASSPHGSRMN KPETGPAQLV GKHNKGCNCK  180
KSGCLKKYCE CFQANILCSD NCKCIDCKNF EGSEERRALF HGSSYNTMIY QAANAAINGA  240
IGSSGPSGYS NSPGSRKRRS QELFIGMYNN QPFYRNAHYM QGNHVKSAPP TLPSEPPATR  300
GTSSPAASKI TYRSPLAGVI QPQDVKELCS LLVIVSKEAA KTFVDKNRNI DYQEKDESRT  360
HGSFEIKEKV NEQKEYKMEK GALQNHSTDE QAVRICPESS GLDESDALNG RPASPGTMAL  420
MCYEQETVLM EESARGPTVD SQNTAPDTSS EQKVTDCFVK QERAVLTNFR DFLNRLITCG  480
SIKETMCSSQ VRDEAGNQGP SLKTDAFNNR HLSNGVIKPF ASMANHTPAT RTGGVAFGST  540
NAFNQHMGLP IENGMLKPKT EKTV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-128	CPP family protein