PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029711-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 680aa MW: 77871.4 Da PI: 6.3925

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029711-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	5e-08	152	201	47	90
FAR1 47 k......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++++ r+ a tr +Cka+++ k +k+gk ev + +HnHel+ AUR62029711-RA 152 NeedvnvKTRKPRQVAITRSNCKACIRAKVNKEGKIEVVAHVIQHNHELT 201 03444346788889999*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MENSTFDTTN FSNLIHELLQ KQRQIETEFE IDLNRSIIEE EETKSFGDEF VPILNNINNV 60 DDAEEAINNA EEAIENAEEA IENAEEPIEN AEEPIDNAEY QVVPGKSIDS NSEQTTKSNA 120 TEDTNPIHAS GLDLRGKRNS GFKKTKLVEM VNEEDVNVKT RKPRQVAITR SNCKACIRAK 180 VNKEGKIEVV AHVIQHNHEL TRSQWHYLHP SERKMTEEKA EAIKTMKSSG LTTMDTYKYM 240 ATEAGGEQNI GHSVVDHLNF CSRLRMEQIE ARDAQNLVNI LNQEQSKDPK FFFRVKFGKD 300 GRISNIFWID SMMLEDYRIY GDVLVFDTTY RTNRYNLICA PFVRINNHWH NSMENKKPTS 360 IFTDQDQAMA NAIEQVLPNT RHRLCIWHLE QNAITRFGAL KKDKEFKYAF NQCLKMCVTE 420 QEFEAKWQAM MQKYELTAHS WYQRVYELKE KWCPALSRDF FSAGILSSQR SESTNHAIGF 480 IASKATTLTE FYTIFKKTIN RWRSTEKYDE FTCSKSITFT SLPLSGMLKH AAQVFTLSLF 540 RDFEEEFGYS MATTVQMIGR NEECLLYQVA LEDKPWSAHQ NSTLAFSNKN TRQCCQRESA 600 EAASNVPDVA DSNHSNDDVS SASSTSTSVP TILDPQRVVT KGRSNRAKGG LEKSKRKRKP 660 ALPPPHSEFG SKTPNLRLF*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MENSTFDTTN FSNLIHELLQ KQRQIETEFE IDLNRSIIEE EETKSFGDEF VPILNNINNV  60
DDAEEAINNA EEAIENAEEA IENAEEPIEN AEEPIDNAEY QVVPGKSIDS NSEQTTKSNA  120
TEDTNPIHAS GLDLRGKRNS GFKKTKLVEM VNEEDVNVKT RKPRQVAITR SNCKACIRAK  180
VNKEGKIEVV AHVIQHNHEL TRSQWHYLHP SERKMTEEKA EAIKTMKSSG LTTMDTYKYM  240
ATEAGGEQNI GHSVVDHLNF CSRLRMEQIE ARDAQNLVNI LNQEQSKDPK FFFRVKFGKD  300
GRISNIFWID SMMLEDYRIY GDVLVFDTTY RTNRYNLICA PFVRINNHWH NSMENKKPTS  360
IFTDQDQAMA NAIEQVLPNT RHRLCIWHLE QNAITRFGAL KKDKEFKYAF NQCLKMCVTE  420
QEFEAKWQAM MQKYELTAHS WYQRVYELKE KWCPALSRDF FSAGILSSQR SESTNHAIGF  480
IASKATTLTE FYTIFKKTIN RWRSTEKYDE FTCSKSITFT SLPLSGMLKH AAQVFTLSLF  540
RDFEEEFGYS MATTVQMIGR NEECLLYQVA LEDKPWSAHQ NSTLAFSNKN TRQCCQRESA  600
EAASNVPDVA DSNHSNDDVS SASSTSTSVP TILDPQRVVT KGRSNRAKGG LEKSKRKRKP  660
ALPPPHSEFG SKTPNLRLF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-63	FAR1 family protein