PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030018-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 310aa    MW: 34905.3 Da    PI: 5.3661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030018-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.9e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   AUR62030018-RA 21 RGPWTVEEDLALINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding50.64.5e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   AUR62030018-RA  74 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDVNNTTISS VNSEDELDLR RGPWTVEEDL ALINYIATHG EGRWNSLARC AGLKRTGKSC  60
RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAAAATNGP HTTATATTSG GSGTTTATGG  180
PTMGYTDNFI HAPVNSNFTP ENSGNSSDSY GTQVSDFGDY YGIPVANQSV NQDYYQGGDQ  240
VNYGGDNNSL TSPNNCNYLN NQGMDFQGVD NYMEQNSQQQ WSSFGLGDTT DNLWNIEDIY  300
VLQQQFSNM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-89MYB family protein