PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030240-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20220.1 Da    PI: 10.8248
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030240-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-21955147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ie +s r vtfskRr g +KKA+ELS+LC+ae+a+i+fs+ gk +
  AUR62030240-RA  9 KKIEKSSSRLVTFSKRRSGAFKKANELSTLCGAEIAIIVFSPGGKPF 55
                    68****************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGRRKLEMKK IEKSSSRLVT FSKRRSGAFK KANELSTLCG AEIAIIVFSP GGKPFSFGKP  60
NIETVVNRFQ NRNQKRSRSH ENGSRASNKK TQKRVQKLNH ELINLDAQVE SENQKNEKFN  120
QWGNNCLFEG KQPIEQLDLN HLKIFKRQLN DLCTNSHSQV MEFQASQSLL LLANME*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-39M-type_MADS family protein