PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030486-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 431aa MW: 48655.6 Da PI: 5.1382

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030486-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.8	5.2e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + ++++fC ++ +lC+ C ++ H+ H++v AUR62030486-RA 17 ARACESCLKRRARWFCAADDAFLCQACDSSVHSAnelasrHNRV 60 578*****************************667888888876 PP
2	CCT	67.8	3e-23	367	410	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ AUR62030486-RA 367 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 410 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MSTHCKKTAN AVGGKTARAC ESCLKRRARW FCAADDAFLC QACDSSVHSA NELASRHNRV 60 RLESKLNPQP SPSWHQGFTK KARTPRGNNN AKTNKPSYNN YEMRVVPEVN DPFEIKEFKN 120 SNNNKSSVVE GGFEEDDFNI SLIGFEGDNN NEWENYLPAG FLPSDNDLAE FAADVESLIE 180 HEATEEGGKG GDEEADDELQ LLFPGVKIEE EGDISATTDH CYFDWSIDVE SEMFNFDLNQ 240 TYGNNSNHDQ SQVSGVEEDE EEDGKKVVVP KHEATEVEEE LEGGKDVEAN NKRRKILLRL 300 NYDEVINAWA SQGCLSPWTT GRRPEFEFDH HGWPYCMGGM FPTGVPHPQG EGWMGMRGNA 360 NGGDEGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RLKGRFVKRT SLSQVVGVGV 420 EPTFPNYHNK *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MSTHCKKTAN AVGGKTARAC ESCLKRRARW FCAADDAFLC QACDSSVHSA NELASRHNRV  60
RLESKLNPQP SPSWHQGFTK KARTPRGNNN AKTNKPSYNN YEMRVVPEVN DPFEIKEFKN  120
SNNNKSSVVE GGFEEDDFNI SLIGFEGDNN NEWENYLPAG FLPSDNDLAE FAADVESLIE  180
HEATEEGGKG GDEEADDELQ LLFPGVKIEE EGDISATTDH CYFDWSIDVE SEMFNFDLNQ  240
TYGNNSNHDQ SQVSGVEEDE EEDGKKVVVP KHEATEVEEE LEGGKDVEAN NKRRKILLRL  300
NYDEVINAWA SQGCLSPWTT GRRPEFEFDH HGWPYCMGGM FPTGVPHPQG EGWMGMRGNA  360
NGGDEGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RLKGRFVKRT SLSQVVGVGV  420
EPTFPNYHNK *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	394	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-42	CO-like family protein