PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030594-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 323aa MW: 36266.3 Da PI: 6.5008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030594-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.2e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l+ + +G g+W+++++ g+ R++k+c++rw +yl AUR62030594-RA 13 RGLWSPEEDDRLATHIINHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	54.1	3.6e-17	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+ ++++++ lG++ W+ Ia++++ gRt++++k++w++ AUR62030594-RA 66 RGSFTEEEERTIIEVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DDRLATHIIN HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EEEERTIIEV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGF 120 DPNTHNLLQK KSKSKTNASK SANHHRFPSN SSSLVFSDDH DPQTCFPKTD NDTELQNNTI 180 NFECNNSASY TQLHNIAPTS DFWSNEFLAM NKSDSISNDV NLCGYTLDEN SIWNTSTSLE 240 NFVQPMQTTQ VIPTQEIIGG ANDYDLDASL FNMLSINYGF EDYPASTTIL PAAGVYGGEM 300 GYAMDQVAWC EGNNFQCGSF AL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	3e-80	MYB family protein