PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030826-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 344aa    MW: 38627.9 Da    PI: 10.4172
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030826-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029152174123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  AUR62030826-RA 152 FSCNYCQRKFYSSQALGGHQNAH 174
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MKRKVLSTSL FKPATLGKAY FSAYNGQVEL APRSLEYWMD SVISQAQSTL GTLVLQRSTF  60
GGINSKISNV SSRLPTVNQI LASIKRKRSM DTIILSLVAS VCTFLIFIYW LTNNDFEEQD  120
DYDPKLDLIG GFNKDKNPIS NVERLVGEAR TFSCNYCQRK FYSSQALGGH QNAHKRERTL  180
AKRGQRMMTT STTRGNYHLP QHFYKSNRPL TSSYPSNISA LPLYGLYYNK HNNNNHNLNR  240
PLGIQAHSLI HKPSYGSRVP MIDQQPAIRR LAMASSSSSS HNAGPGHGVA RFDSVHHHKN  300
SQPLDRNNNI GGGLCWKETV NVLKTSLKQD HDHLHKLDLS LKL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-28C2H2 family protein