PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030929-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20410.2 Da    PI: 10.3011
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030929-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.9e-281058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ri+n++ rqvtfskRr g++KKA ELS+LCda+v +iifsstgklye++
  AUR62030929-RA 10 RIDNTTSRQVTFSKRRSGLIKKARELSILCDAQVGLIIFSSTGKLYEFA 58
                    9***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MGRGKLVIQR IDNTTSRQVT FSKRRSGLIK KARELSILCD AQVGLIIFSS TGKLYEFANT  60
NMRSVIERYH NTHDCVLQPT SADDLKDQLL ADEITDLKRN GGLTRQENIQ LHQKLHIVKQ  120
ENSDLRNKLN GTYKEHQAYQ RPHTSISVQS ERYVPVRLQL SQPQPLNIDA SARTTTKLG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.14e-42MIKC_MADS family protein