PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030930-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25898.4 Da    PI: 5.4871
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030930-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-26957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ri+n + rqvtf+kRr+g++KKA+ELS+LCdaev +iifsstgk+ye 
  AUR62030930-RA  9 ERIDNLTSRQVTFTKRRKGLFKKAKELSILCDAEVGIIIFSSTGKVYEI 57
                    69*********************************************95 PP
2K-box74.92.2e-2575169698
           K-box   6 gks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++  + +++a+ ++ e++ L++++e+L+++ R+llGedL++Ls+++L+ Le qLe + k iRs+K+e++ ++i+el k e  +++en++L+kk+
  AUR62030930-RA  75 ENQvlNPTSEAQLWKVEAEGLRQQLEELRKNSRQLLGEDLSELSIEHLETLEAQLEMGTKAIRSRKEEIFQNKIQELNKTEILVHQENMELHKKI 169
                     44445778999**********************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRGKITIER IDNLTSRQVT FTKRRKGLFK KAKELSILCD AEVGIIIFSS TGKVYEIASH  60
CMQSLLERYY KANEENQVLN PTSEAQLWKV EAEGLRQQLE ELRKNSRQLL GEDLSELSIE  120
HLETLEAQLE MGTKAIRSRK EEIFQNKIQE LNKTEILVHQ ENMELHKKIN LMRQEMIELQ  180
KKVELNDTNL SIQVTGGQGR DDQEGGTSSG GAASAYDTYD PIELKLS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-71MIKC_MADS family protein