PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030952-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 450aa MW: 51219.2 Da PI: 6.2394

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030952-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	199	245	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd+ll+++v ++G + W+ Ia+ ++ +R +kqc++rw+++l AUR62030952-RA 199 KGQWSKEEDDLLIQLVDRYGVRKWSQIAQLLN-RRVGKQCRERWHNHL 245 799***************************.***********97 PP
2	Myb_DNA-binding	57.1	4.2e-18	251	293	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd +l++a+++ G++ W+ Ia+ ++ gRt++++k++w+ AUR62030952-RA 251 KDEWSEEEDRILIKAHTEIGNK-WAEIAKLLP-GRTENSIKNHWN 293 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MDFDAKFREK FSPHPSLFSP QNNHSNPRDD QFSLESALLS KGATNFLQDL HPLENFDLNL 60 DLHGSPNAFY PIHQPNCMES YDNSPFECVP SFDFYETKPF VNHATNNVAL VPLIDNLNQN 120 ELGHSPMITP INMISPNAQG YNPFYYYDYL GPTNYRPSDE DSCTTPVTTA TLVPNRLSTT 180 TVVRKGGREH RKKKSTAVKG QWSKEEDDLL IQLVDRYGVR KWSQIAQLLN RRVGKQCRER 240 WHNHLKPDIK KDEWSEEEDR ILIKAHTEIG NKWAEIAKLL PGRTENSIKN HWNATKRRQF 300 SKRKCKSKYP RQSSLLQEYI KGLTLETINA GCRKKPLSYA NRPPALEATT ESPNDHPTGG 360 SSNSSLGELV QPEYDFSEVP DFNFDAQMFE ESSIDSLLDY APPGDNRGSD GQGLAEIVNE 420 CQEHLGPNMM QNGVKMEFDL VQMINHVNL*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MDFDAKFREK FSPHPSLFSP QNNHSNPRDD QFSLESALLS KGATNFLQDL HPLENFDLNL  60
DLHGSPNAFY PIHQPNCMES YDNSPFECVP SFDFYETKPF VNHATNNVAL VPLIDNLNQN  120
ELGHSPMITP INMISPNAQG YNPFYYYDYL GPTNYRPSDE DSCTTPVTTA TLVPNRLSTT  180
TVVRKGGREH RKKKSTAVKG QWSKEEDDLL IQLVDRYGVR KWSQIAQLLN RRVGKQCRER  240
WHNHLKPDIK KDEWSEEEDR ILIKAHTEIG NKWAEIAKLL PGRTENSIKN HWNATKRRQF  300
SKRKCKSKYP RQSSLLQEYI KGLTLETINA GCRKKPLSYA NRPPALEATT ESPNDHPTGG  360
SSNSSLGELV QPEYDFSEVP DFNFDAQMFE ESSIDSLLDY APPGDNRGSD GQGLAEIVNE  420
CQEHLGPNMM QNGVKMEFDL VQMINHVNL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-75	MYB family protein