PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62031211-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 557aa MW: 61457 Da PI: 9.8183

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62031211-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48	3.2e-15	228	318	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ l+k+yk +k++ + + e +s++p+fd l+ AUR62031211-RA 228 CWSEDATFTLIEAWGQRYIELNRGNLRQKQWQEVADTVnnrhgHVKKARRTDVQCKNRIDTLKKKYKIEKARVLDSNGEYKSSWPFFDPLD 318 7***********************************987777777899****************9999888888999***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MARKKKRQQQ STPAPQLQSQ EIRETLFSSS IGAYSRPEVI AEEDELVTPA SGLVHPSAGK 60 VTRRDAAMLA LQFSSMGSKA GVSAISASQA KAPSVLGSGA MLPSSIFDAP LSPAVVVLQP 120 TCNGPFVDAR PSVRYVAGSQ PIHGVIDSPS ADAPLGVSQN ANKKANGGDW NIVRTKGKDV 180 AASQSITSRS NQFAALADPV GGGQGPDSSS PSLAMISSSR PVPVREDCWS EDATFTLIEA 240 WGQRYIELNR GNLRQKQWQE VADTVNNRHG HVKKARRTDV QCKNRIDTLK KKYKIEKARV 300 LDSNGEYKSS WPFFDPLDQL IGSTMPLKKV SSPSPPMAVP LIAHRTPVIL PQKRPAPSPS 360 PPVPTPAPMR VEMSGESSEA DGIRKLARVI EKFGEVYAKV EAEKQRQMVE LEKQRMQFAK 420 EMECQRMQML VEMQVQLEKV KRAKRSDSNG CFKRDGWCEI YFALVALMEI NHSIRLLESW 480 FVVVVVEVCR GLVILSRLVE FMCFFYVLMF AILNMMGIRD WLLIFPLGSE RKITYIMGLS 540 ICLVDRFKES TTFPSL*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MARKKKRQQQ STPAPQLQSQ EIRETLFSSS IGAYSRPEVI AEEDELVTPA SGLVHPSAGK  60
VTRRDAAMLA LQFSSMGSKA GVSAISASQA KAPSVLGSGA MLPSSIFDAP LSPAVVVLQP  120
TCNGPFVDAR PSVRYVAGSQ PIHGVIDSPS ADAPLGVSQN ANKKANGGDW NIVRTKGKDV  180
AASQSITSRS NQFAALADPV GGGQGPDSSS PSLAMISSSR PVPVREDCWS EDATFTLIEA  240
WGQRYIELNR GNLRQKQWQE VADTVNNRHG HVKKARRTDV QCKNRIDTLK KKYKIEKARV  300
LDSNGEYKSS WPFFDPLDQL IGSTMPLKKV SSPSPPMAVP LIAHRTPVIL PQKRPAPSPS  360
PPVPTPAPMR VEMSGESSEA DGIRKLARVI EKFGEVYAKV EAEKQRQMVE LEKQRMQFAK  420
EMECQRMQML VEMQVQLEKV KRAKRSDSNG CFKRDGWCEI YFALVALMEI NHSIRLLESW  480
FVVVVVEVCR GLVILSRLVE FMCFFYVLMF AILNMMGIRD WLLIFPLGSE RKITYIMGLS  540
ICLVDRFKES TTFPSL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	6e-64	Trihelix family protein