PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62032129-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27732.7 Da    PI: 9.7634
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62032129-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+S+LCda+va+iifs++gkl+ey+s
  AUR62032129-RA  9 KRIENKINRQVTFSKRRIGLLKKAHEISILCDADVALIIFSTKGKLFEYAS 59
                    79***********************************************86 PP
2K-box104.71.2e-348617412100
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + s++ e+akLk+++e Lq+++Rh++Ge+L++L+lkeLq+Le+qL+++lk+iRskKn+l++e+i++lqkk k+lq++n+ L+kk++e
  AUR62032129-RA  86 DSHVSWTLEHAKLKARLEILQKNHRHYMGEELDTLNLKELQNLEHQLDSALKHIRSKKNQLMHESISQLQKKDKALQDHNNLLTKKVKE 174
                     45789*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRIGLLK KAHEISILCD ADVALIIFST KGKLFEYASD  60
SCMEKFLERY ERYSFAERQL TAPDPDSHVS WTLEHAKLKA RLEILQKNHR HYMGEELDTL  120
NLKELQNLEH QLDSALKHIR SKKNQLMHES ISQLQKKDKA LQDHNNLLTK KVKEREKALA  180
QDQHKHDNNS SGFMSQAMPS LNIGPGTGRS AIEDEQAQPP TRSNNSTLIP SWMLCHMPEQ  240
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-102MIKC_MADS family protein