PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62032471-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 618aa    MW: 68380.8 Da    PI: 6.6378
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62032471-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-22123223198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  AUR62032471-RA 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 213
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  AUR62032471-RA 214 NGELRVGVRR 223
                     999*****98 PP
2Auxin_resp113.52e-37249331183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv+d+++++W nS+WrsLk
  AUR62032471-RA 249 AAHAIQTGTLFSVFYKPRTSRSEFLVSVNKYLEAKSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVNDTSSSSWANSEWRSLK 331
                     79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MALQGIHQSA GQPEQDALYK ELWYACAGPL VNVPRQGERV YYFPQGHMEQ LEASTHQGLE  60
QQMPSFNLPS KILCKVAHIE LRAEPETDEV YAQITLVPER DQSEITTPDE PVADPPRCNV  120
HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHG SEWHFRHIFR  180
GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRVMRQLNN MPSSVISSHS  240
MHLGVLATAA HAIQTGTLFS VFYKPRTSRS EFLVSVNKYL EAKSHKLSVG MRFKMRFEGD  300
EVPERRFSGT IVGVNDTSSS SWANSEWRSL KVQWDEPSSI MRPERVSPWE LEPLVANSSS  360
NSQPTQRNKR PRPAVMPSSA TDLSAMGIWK SPVESSAVAC AEVDCTRGQF SSVTKAGSVG  420
FTANSSLPVL SSHSIYWSHR AENASESLGS VVNKESGEKR KSSGAGCRLF GIQLFDHSNL  480
DETSTRGGED QPVPSLEAES DRSNVNQPDV PSLSCDPDKI SLNKQSRTCT KVHMQGVAVG  540
RAVDLTRFDC YDDLLKKLEQ LEFCSMVRKI FIYTSEEVKR LSTKSKISVE EEAKPGYTDA  600
EMPAASEEQS SAVGPSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein