PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62032870-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 194aa MW: 21450.7 Da PI: 9.4674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62032870-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	27	73	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L ++P + kK +K ++L +A++++k+Lq AUR62032870-RA 27 DHIIAERKRRELLSQLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKELQ 73 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MSQPSKTKQA VSSGGAKRKR QPSQVQDHII AERKRRELLS QLFISLSAIV PGLKKIDKTS 60 VLGEAIKHMK ELQEKVKVLE SVIAKRTMES VVLVKKSKLM VDEGSSDNNV SSSTTVDDYC 120 RSSNNDDGDS SSDSLPEVEV KILGNSLLLR VYCGQQKDIL VKLFAEIDKH HLSITNFSVI 180 PFENLAQDIT IVAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	36	KRKRQPSQVQDHIIAERKRR
2	17	58	KRKRQPSQVQDHIIAERKRRELLSQLFISLSAIVPGLKKIDK
3	18	37	KRKRQPSQVQDHIIAERKRR
4	32	37	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-36	bHLH family protein