PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62032938-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 366aa MW: 39860.7 Da PI: 6.7963

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62032938-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	12	55	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a++ + + +W++Ia+ ++ g+tl+++k+++ AUR62032938-RA 12 WSREQDKAFENAIATHSDDledNWEKIAADVP-GKTLEEVKNHYE 55 ***************99*********.********96 PP
2	Myb_DNA-binding	25.7	2.7e-08	201	236	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + +Rt+ q+ s+ qky AUR62032938-RA 201 FLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 236 777899*****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MTVDEKGDSS FWSREQDKAF ENAIATHSDD LEDNWEKIAA DVPGKTLEEV KNHYELLFED 60 VKEIEAGRVP LPSYSSSSEG SSGLAAEEGN GGKKGQFANA GSEPNQGSKA SKADQERRKG 120 IAWTEDEHRQ TVILCTISIS FINWELYDAL MSEQCAYLHQ FEEARVRIVN RRDIVQKETP 180 CIWGVHCASH TYWLAHRIWL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL 240 NSMNKDRRRS SIHDITNVNS GDVSASQGPI TGQANAPASG TAPGKTEKQV AQPPAAPTGV 300 GMYGTPTIGQ PIGGPLVTAV GTPVNLPPPH MAYGVRVPVP GSVVPGAPMG MAPLTYPMPH 360 TSAHR*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MTVDEKGDSS FWSREQDKAF ENAIATHSDD LEDNWEKIAA DVPGKTLEEV KNHYELLFED  60
VKEIEAGRVP LPSYSSSSEG SSGLAAEEGN GGKKGQFANA GSEPNQGSKA SKADQERRKG  120
IAWTEDEHRQ TVILCTISIS FINWELYDAL MSEQCAYLHQ FEEARVRIVN RRDIVQKETP  180
CIWGVHCASH TYWLAHRIWL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL  240
NSMNKDRRRS SIHDITNVNS GDVSASQGPI TGQANAPASG TAPGKTEKQV AQPPAAPTGV  300
GMYGTPTIGQ PIGGPLVTAV GTPVNLPPPH MAYGVRVPVP GSVVPGAPMG MAPLTYPMPH  360
TSAHR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-52	MYB family protein