PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62032954-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 220aa MW: 22633.2 Da PI: 7.349

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62032954-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.6	2.5e-26	1	83	24	104
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaakskksqksa 104 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s s ++ ++g +a+ ++k+++s++++ AUR62032954-RA 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHSLASHHHLRTAGLSASGDNKTSPSPSPT 83 9*****************************************99999888444444444444333333333333444333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TSSPHSLASH 60 HHLRTAGLSA SGDNKTSPSP SPTPFLLGKR LRTTAEENEA QNGVVDKEDV VTTASLGPTA 120 GYWAIPARPD FWSFAAGPEM VVGPGGALGQ QAAAAAAMAG RFLTHTQQQQ HVTLGEASRV 180 GNYLPIAQGH HLNLLASLSG APASGAGGSS GGRRDDDPR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-32	TCP family protein