PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033383-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 175aa MW: 19910.7 Da PI: 9.536

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033383-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.4	2.4e-20	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien + rqvtfskRrng+lKKA+ELSvLCdae AUR62033383-RA 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAE 42 79******************************98 PP
2	K-box	81.8	1.6e-27	41	126	14	99
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ae+l++e a L k+ie + ++R+llGe+L+s+sl+eLqqLe+qLe+s++kiR++Kn+++ eqi++l++kek l en++L++k+e AUR62033383-RA 41 AENLKEETATLVKKIEAVEASKRRLLGENLGSCSLEELQQLESQLERSVSKIRARKNQVFNEQIKQLREKEKYLAAENTRLTEKYE 126 699*******************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AENLKEETAT LVKKIEAVEA 60 SKRRLLGENL GSCSLEELQQ LESQLERSVS KIRARKNQVF NEQIKQLREK EKYLAAENTR 120 LTEKYETLPK ESRSQPIIAE DASPSEDTIS QISDVETDLF IGLPESRIRR LTNA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	3e-50	MIKC_MADS family protein