PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62033532-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 124aa    MW: 13646.9 Da    PI: 10.1129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62033532-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.8e-211966249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i+nks++qvtfskRr+g++ KA+EL+  C++e av+ fs+ gk+y +
  AUR62033532-RA 19 PIDNKSRKQVTFSKRRAGLFRKASELCSTCGVECAVVTFSPAGKVYSF 66
                    59********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    
MAAVGKISGK GKRKIDIIPI DNKSRKQVTF SKRRAGLFRK ASELCSTCGV ECAVVTFSPA  60
GKVYSFGHPN ADEIIQRAFP TFRSYEEVLA QPIEDMGLDD LERFKVALEG LRSRVALKVK  120
EIN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-27M-type_MADS family protein