PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62033584-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 253aa    MW: 27337.5 Da    PI: 6.4121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62033584-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014226249123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++Cp C+ksF +    ++H +  H
  AUR62033584-RA 226 FVCPSCSKSFGSEQAVQSHSKAkH 249
                     89*****************88766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MEFWGAEIKS GGSLKVNPGR GKMLHLSQVC IGEIKKDKGN DYIRLYVHKN GQKFIAGMLS  60
LERIPQVTLD LIFEDEFELS HDLKQGKDDL EELVPIDALN NGKPEANDLK PSGSKPNAGL  120
KPEKAEGTSK EMASSDAESD EEDDSDEEED SDEETPKKPE PAKKRPGEST SKTPVPEKKA  180
KFSTPQQKTE GKKVSGHVAT PHPAKQTGKT PAVADKSNKQ TPSKSFVCPS CSKSFGSEQA  240
VQSHSKAKHG GN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-22C2H2 family protein