PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033700-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 460aa MW: 51883.8 Da PI: 7.1281

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033700-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.4	8.6e-12	90	187	2	87
FAR1 2 fYneYAkevGFsvrkskskkskrnge..itkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+Y+k+ GF v+ ++s ++ +g t++C k++++++ + + t++++++gC ak+ + ++g+w++++++l+H AUR62033700-RA 90 FYNAYGKQEGFGVVLAQSAYKWVDGVkvKRATTWKCDYASKPDSRRRVggkrvsrelEGEPVATKKSKKCGCGAKVYAGLLENGRWKLKNVVLQH 184 9**************99995555400445689***9999988898888887777788****************************** PP FAR1 86 .nH 87 nH AUR62033700-RA 185 tNH 187 667 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MTVGSGECGD YVQKMEEMVE YDELMDEIVE YDRQMDEIIV DGNGDSGGSY TPDEKEHNTD 60 VQNMVNMDCV RVDPPEVGMI FNSWQEADVF YNAYGKQEGF GVVLAQSAYK WVDGVKVKRA 120 TTWKCDYASK PDSRRRVGGK RVSRELEGEP VATKKSKKCG CGAKVYAGLL ENGRWKLKNV 180 VLQHTNHNPT PSKAMFVAKY RLDELEKVPY VKRRLQFGDD VERLADGNSA LYLRGLITDF 240 KIEETYRHCI NALETQQVPN VPQKYILDRW HKDVYRKHTR VKVAYHDIFK TADVLRFDKM 300 NFVFEAISYL ASEKDEAFSM VIAGLRDLEL KIKEIVKPTL PLSSVGEAMT DNTPQSSRNM 360 AIACPTVFAT PSSVGRSVIG GYGGAGTDGL DLTIADESQQ TDLGVGIKDP PSNRGSGGVR 420 ASRFMTIFEE VCRQKEARRK YYEEKQRRKD RAKKKDDSV*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MTVGSGECGD YVQKMEEMVE YDELMDEIVE YDRQMDEIIV DGNGDSGGSY TPDEKEHNTD  60
VQNMVNMDCV RVDPPEVGMI FNSWQEADVF YNAYGKQEGF GVVLAQSAYK WVDGVKVKRA  120
TTWKCDYASK PDSRRRVGGK RVSRELEGEP VATKKSKKCG CGAKVYAGLL ENGRWKLKNV  180
VLQHTNHNPT PSKAMFVAKY RLDELEKVPY VKRRLQFGDD VERLADGNSA LYLRGLITDF  240
KIEETYRHCI NALETQQVPN VPQKYILDRW HKDVYRKHTR VKVAYHDIFK TADVLRFDKM  300
NFVFEAISYL ASEKDEAFSM VIAGLRDLEL KIKEIVKPTL PLSSVGEAMT DNTPQSSRNM  360
AIACPTVFAT PSSVGRSVIG GYGGAGTDGL DLTIADESQQ TDLGVGIKDP PSNRGSGGVR  420
ASRFMTIFEE VCRQKEARRK YYEEKQRRKD RAKKKDDSV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	456	RKDRAKKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	5e-10	FAR1 family protein