PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033836-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 443aa MW: 48092.9 Da PI: 9.7289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033836-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	204	226	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp+Cg++F+ ++L++H+ + H AUR62033836-RA 204 ACPHCGEVFPKIESLEHHQAVrH 226 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MTPLLGLIFM GILTFIPPDS ATTTSRTNKP KSKPKHGRKY KHHNKEEKQE NKKQQTPIKQ 60 STNPKPKQPS SWDQIKNLLT CKQVEGSRVH DPSKGSSVSS CGSMCSFRDV VHGNTRVVHR 120 PDNSSPESSS LGQEARLLHR GKTGAGSMSS RSLSGSVRSG SSVTTAHSIS SRGMPLRKLS 180 GCYECHMIVD PSRYPIIPRT TVCACPHCGE VFPKIESLEH HQAVRHAVSE LGPEDSGRNI 240 VEIIFKSSWL KKDNPICKIE RILKVQNTQR TIQRFEDCRD AVKLRANNNT KKNPRCAADG 300 NELLRFHCTA LTCSLGARGS SNLCGSVPGC GVCTIIRHGF QGNMGVRTTA SSGRAHDCLD 360 CTDGRRAMLV CRVIAGRVKR SANDAPAEEE IMSLEGPSGN ATSYDSVAGS AGIYSNLEDL 420 VVTNPKAILP CFVVIYKTLT TA*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MTPLLGLIFM GILTFIPPDS ATTTSRTNKP KSKPKHGRKY KHHNKEEKQE NKKQQTPIKQ  60
STNPKPKQPS SWDQIKNLLT CKQVEGSRVH DPSKGSSVSS CGSMCSFRDV VHGNTRVVHR  120
PDNSSPESSS LGQEARLLHR GKTGAGSMSS RSLSGSVRSG SSVTTAHSIS SRGMPLRKLS  180
GCYECHMIVD PSRYPIIPRT TVCACPHCGE VFPKIESLEH HQAVRHAVSE LGPEDSGRNI  240
VEIIFKSSWL KKDNPICKIE RILKVQNTQR TIQRFEDCRD AVKLRANNNT KKNPRCAADG  300
NELLRFHCTA LTCSLGARGS SNLCGSVPGC GVCTIIRHGF QGNMGVRTTA SSGRAHDCLD  360
CTDGRRAMLV CRVIAGRVKR SANDAPAEEE IMSLEGPSGN ATSYDSVAGS AGIYSNLEDL  420
VVTNPKAILP CFVVIYKTLT TA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-162	C2H2 family protein