PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033960-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 768aa MW: 89005.9 Da PI: 6.6046

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033960-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.8e-18	133	242	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkkekdgk 75 Y+++A+ +GFsvrk +s+++ n i ++ fvCsk g r++ kk+ ++++ r +etrt+Cka+++ k++k+g+ AUR62033960-RA 133 LYKAHARALGFSVRKGTSRRRCSNSVIFEKYFVCSKAGLRNKGKKEvqtkslvgisttegsastisqKKRKLRVVNETRTDCKASIRFKMDKEGR 227 7****************************************999**************9655555567789************** PP FAR1 76 wevtkleleHnHela 90 + v++ + HnH+++ AUR62033960-RA 228 FIVADHNIIHNHDFV 242 **********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MEKKAQKKML IERKIQQPQE IKPSQGETSF SCEIKPSHVG EYETHERDPT IINDQQSCDG 60 NDNGETSFSY DDTQLGLIGE DERDCGTLNN QHSPDANDNE NQQEEDYTYD NDLSIGECLL 120 GREVLDLDDA LNLYKAHARA LGFSVRKGTS RRRCSNSVIF EKYFVCSKAG LRNKGKKEVQ 180 TKSLVGISTT EGSASTISQK KRKLRVVNET RTDCKASIRF KMDKEGRFIV ADHNIIHNHD 240 FVKQEECHCL RSKLSTSKCL GKVIETMVTS GSKKMDCCKY LCIADKEKEL DGHTKTDYLN 300 IVSRLKIKNS KGGDVQNVLD VMQRRTTDGN SFFCRVKIND DNQIVSIFWR DSMMLEDYIA 360 YGDALIFDTT YRINRYNLIC APFFGINNHW KTTMFACAFI FDEKTEIFEW LLETFKNSIS 420 GLVPKSIFTD QNIELTNAIA KVFPNSRHRL CIWHLQTNFI SNFDMLRNNP TFMDIFNKCL 480 TGCDNEEEFL RCWTEMISTY GLEESFGFSQ LYKLRDKWCT ALSKDFFTAR ILSSQKVEVI 540 NRAVSFGANQ TTSLFEFYHI FEDTVKRWRN IEEIDNFKCS TERHPASESQ CKLLKHAAEV 600 YTLDLFDDFQ KEFDMAMGSY IRAVANHGCS KMYEVSLNED FTQSHNVQYD DEFLELSCTC 660 MSYQECGLLC YHILRVMHMH CIFEIPKKYI MKRWTKLAKS EIWTKHKDDD DALTVEDKEL 720 QTPWRHTMAR SFYNLLTTCQ FNEHAKKVCE QGLNDLRNAV KPKFSNK*

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MEKKAQKKML IERKIQQPQE IKPSQGETSF SCEIKPSHVG EYETHERDPT IINDQQSCDG  60
NDNGETSFSY DDTQLGLIGE DERDCGTLNN QHSPDANDNE NQQEEDYTYD NDLSIGECLL  120
GREVLDLDDA LNLYKAHARA LGFSVRKGTS RRRCSNSVIF EKYFVCSKAG LRNKGKKEVQ  180
TKSLVGISTT EGSASTISQK KRKLRVVNET RTDCKASIRF KMDKEGRFIV ADHNIIHNHD  240
FVKQEECHCL RSKLSTSKCL GKVIETMVTS GSKKMDCCKY LCIADKEKEL DGHTKTDYLN  300
IVSRLKIKNS KGGDVQNVLD VMQRRTTDGN SFFCRVKIND DNQIVSIFWR DSMMLEDYIA  360
YGDALIFDTT YRINRYNLIC APFFGINNHW KTTMFACAFI FDEKTEIFEW LLETFKNSIS  420
GLVPKSIFTD QNIELTNAIA KVFPNSRHRL CIWHLQTNFI SNFDMLRNNP TFMDIFNKCL  480
TGCDNEEEFL RCWTEMISTY GLEESFGFSQ LYKLRDKWCT ALSKDFFTAR ILSSQKVEVI  540
NRAVSFGANQ TTSLFEFYHI FEDTVKRWRN IEEIDNFKCS TERHPASESQ CKLLKHAAEV  600
YTLDLFDDFQ KEFDMAMGSY IRAVANHGCS KMYEVSLNED FTQSHNVQYD DEFLELSCTC  660
MSYQECGLLC YHILRVMHMH CIFEIPKKYI MKRWTKLAKS EIWTKHKDDD DALTVEDKEL  720
QTPWRHTMAR SFYNLLTTCQ FNEHAKKVCE QGLNDLRNAV KPKFSNK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-86	FAR1 family protein