PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62034188-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 198aa MW: 22237.8 Da PI: 6.4017

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62034188-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.7	9.6e-12	6	52	2	45
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 g+W+ Ed+l+ +a +G +W +Ia +++ gR++ ++++++ AUR62034188-RA 6 GKWSRAEDKLFEEALVIFGDLateeRWQKIADHVP-GRSATEVRDHYE 52 79***************77**********.********96 PP
2	Myb_DNA-binding	26.2	1.8e-08	83	116	14	47
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +++G+g+W++I+r + +Rt+ q+ s+ qky AUR62034188-RA 83 IGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 116 5789*****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MRGDLGKWSR AEDKLFEEAL VIFGDLATEE RWQKIADHVP GRSATEVRDH YEALLHDVEQ 60 IDSGLVELPS YSDELAASWL FLIGLEKYGK GDWRSISRNV VVTRTPTQVA SHAQKYYLRQ 120 NSGKKERKRS SIHDITTVDE KSAARPAVEQ SWIPQPGGNA MDHHTAYQQM GASPPFNAAN 180 TTQEGSPFGY QTFRFPM*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-56	MYB family protein