PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62034222-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 465aa MW: 50948.8 Da PI: 9.72

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62034222-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	231	253	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C++ F+ ++ L+ H + H AUR62034222-RA 231 SCHKCKEQFNKWDALEAHHLSnH 253 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MEGGKQGKKK QQQQQGKENS KPNVWFSLKK SLHCKSEPSD VHDPSKNINI NNNKIMNSIL 60 TRRVGRSGCS RSIANLKDVI NGGSKRHIEK PPSCSPRSIG SSEFLNPITH EVILSNNNSR 120 CELKITGYGP FDRSGFGSNS IGCQEDEARK GEESAFVGTL RPGTPGPGGH PTMHYFNNTN 180 NSANPSFLRA NGRKSFSLER DNGSGSSNSK KRFSLEIDSN GSSSSSSVQL SCHKCKEQFN 240 KWDALEAHHL SNHAVTELVE GDSSRKIVEI ICRTSWLKSE NHCGRIERVL KVHNTQKTIA 300 RFEEYREMVK IKASKLPKKH PRCIADGNEL LRFYGTTVAC SLGIDGSSSL CVSGKCCVCR 360 IIRHGFYTKK EIKSGVGVFT TSTSGRAFEG IESIDGDPSI KKALIVCRVI AGRVHRPLEN 420 LQELAGQTGF DSLAGKVGLY SSIEELYLLS PRALLPCFVV ICKS*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MEGGKQGKKK QQQQQGKENS KPNVWFSLKK SLHCKSEPSD VHDPSKNINI NNNKIMNSIL  60
TRRVGRSGCS RSIANLKDVI NGGSKRHIEK PPSCSPRSIG SSEFLNPITH EVILSNNNSR  120
CELKITGYGP FDRSGFGSNS IGCQEDEARK GEESAFVGTL RPGTPGPGGH PTMHYFNNTN  180
NSANPSFLRA NGRKSFSLER DNGSGSSNSK KRFSLEIDSN GSSSSSSVQL SCHKCKEQFN  240
KWDALEAHHL SNHAVTELVE GDSSRKIVEI ICRTSWLKSE NHCGRIERVL KVHNTQKTIA  300
RFEEYREMVK IKASKLPKKH PRCIADGNEL LRFYGTTVAC SLGIDGSSSL CVSGKCCVCR  360
IIRHGFYTKK EIKSGVGVFT TSTSGRAFEG IESIDGDPSI KKALIVCRVI AGRVHRPLEN  420
LQELAGQTGF DSLAGKVGLY SSIEELYLLS PRALLPCFVV ICKS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-149	C2H2 family protein