PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62034402-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 356aa MW: 40035.3 Da PI: 6.7906

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62034402-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv +++++G+g+W++++ g+ R+ k+c++rw +yl AUR62034402-RA 14 KGPWTPEEDILLVSYIQEHGPGNWRAVPTDTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49	1.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l AUR62034402-RA 67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPGNWRAV PTDTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKKQ 120 SDNNHHQSSR SDGFISSPSS PENQSSNSRG QWERRLQTDI HMAKQALCDA LSTMDQKPTS 180 NMPDMMNSSQ NISLNTSHNN SSKQGQTASS IYASSTENIA RLLQGWNMKS PKKEQSSSVS 240 TDHHSLSSTM EVEYGHEQKP KVASDHNFSK NEAFHSLFGT IESSESPYSD FSQTVSPEEA 300 SFFEHESKPL SDGGRGTLSV LEKWLFDDCS IQHCGPQSQV HDLIDMPLQE TADFE*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPGNWRAV PTDTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKKQ  120
SDNNHHQSSR SDGFISSPSS PENQSSNSRG QWERRLQTDI HMAKQALCDA LSTMDQKPTS  180
NMPDMMNSSQ NISLNTSHNN SSKQGQTASS IYASSTENIA RLLQGWNMKS PKKEQSSSVS  240
TDHHSLSSTM EVEYGHEQKP KVASDHNFSK NEAFHSLFGT IESSESPYSD FSQTVSPEEA  300
SFFEHESKPL SDGGRGTLSV LEKWLFDDCS IQHCGPQSQV HDLIDMPLQE TADFE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	1e-103	MYB family protein