PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62034559-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 197aa MW: 22552.8 Da PI: 8.4554

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62034559-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.4	6.7e-27	9	56	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien++nrqvt+skRrng++KKA EL vLCda v++i++ss++kl+e AUR62034559-RA 9 KKIENQTNRQVTYSKRRNGLFKKATELAVLCDASVSIIMISSSNKLHE 56 68*********************************************8 PP
2	K-box	62.7	1.4e-21	71	140	1	70
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 yq+ + ++l++++++++q++l+ L++ ++ Lq+ +R+++G++Le+L+++eL+ Le+++ +++k iR++K+ AUR62034559-RA 71 YQRVKEVDLWAKQYQKMQKDLQELNEINRGLQKDIRRRMGDCLEDLDINELRCLEDEMVNAVKVIRERKD 140 55566677************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KATELAVLCD ASVSIIMISS SNKLHEQHSP 60 GITPKEVYDK YQRVKEVDLW AKQYQKMQKD LQELNEINRG LQKDIRRRMG DCLEDLDINE 120 LRCLEDEMVN AVKVIRERKD IPKEESQYGL VDNGEYNHVL GYNDDSRILA LRLQPCQPNL 180 HAGAGSGSCV TTYTLL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-72	MIKC_MADS family protein