PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035220-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 260aa MW: 28162.1 Da PI: 8.0606

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035220-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.9	1.6e-28	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C++dCv++p++ ++q++++ +++k++G++ +l+ll+a e+ r+++++sl+yeA+ r+ dP+yG+vg++ ++q++ +ql AUR62035220-RA 4 SCNGCRILRKGCNDDCVIRPCLnwmmsGDAQSNATLFLAKFYGRAGLLNLLNAGAEHLRPAIFQSLLYEACGRVVDPIYGSVGLLYSGQWRHCQL 98 6*******************9988767889************************************************************* PP DUF260 91 kaelall 97 +++++l AUR62035220-RA 99 AVDAVLK 105 9998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MRTSCNGCRI LRKGCNDDCV IRPCLNWMMS GDAQSNATLF LAKFYGRAGL LNLLNAGAEH 60 LRPAIFQSLL YEACGRVVDP IYGSVGLLYS GQWRHCQLAV DAVLKGLPIM QLSPPSNNHA 120 ISSDGPPLPP QQVLHLPPLK LYDIRHMSSS KDSPTVPATF VVPTGPRLKR RPRGPRAPTF 180 QADQLSINGG NGNDASGDVQ SFEKLSMFSN ESTEGSVSGQ IDGDNEGHQT HHSGGGFGCG 240 VMDVALCFMA SWWCFCRRW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	173	RLKRRPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	2e-53	LBD family protein