PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62035382-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 229aa    MW: 25246.2 Da    PI: 8.235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62035382-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.21.5e-3413112199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++r++C+++C+lap fpae+ ++f++vhk+FG+snv+k++++l+++e r++a++slv+eA +r++dPv G +g ++k+  +l++ ++++
  AUR62035382-RA  13 ACAACKHQRKRCTDKCILAPFFPAEKVREFQAVHKVFGVSNVQKMVRNLHNDEdRKRAADSLVWEALCRQKDPVFGPYGEYRKIYDELKSYQNQA 107
                     7************************************************66555**************************************999 PP

          DUF260  95 allke 99 
                     +++ +
  AUR62035382-RA 108 HAQVH 112
                     87655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MHRTNGISGT HQACAACKHQ RKRCTDKCIL APFFPAEKVR EFQAVHKVFG VSNVQKMVRN  60
LHNDEDRKRA ADSLVWEALC RQKDPVFGPY GEYRKIYDEL KSYQNQAHAQ VHHQTGHFVA  120
QNGHSNGSVY KTGNGLIGWS VNTNGSAVIN KVNYNGGIHD NVGLVDCIRA QCGPVIGSSI  180
YGNCGSQDDL HGAENVRQDI DVNVGSVVPQ QHLLNGFNHG QHYYLPGE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-49LBD family protein