PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62035726-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 884aa    MW: 97302.5 Da    PI: 4.9364
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62035726-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24153254199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+        ++++ + +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD v+F   ++++
  AUR62035726-RA 153 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTMQPPFQ-ELVVKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVGSKRLRAGDAVLFI--RDEK 244
                     99*********************999****996666664.9************************************************..5699 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++v+r+
  AUR62035726-RA 245 GQLMIGVRRA 254
                     99******97 PP
2Auxin_resp111.58.3e-37279362183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++++F+v+YnPra+++eFv+++ k+ ka++ ++vs+GmRf m+fete+s +rr++Gt+vgvsdldp+rWp+SkWr+L+
  AUR62035726-RA 279 AAHAAANRTPFTVFYNPRACPTEFVIPAGKYWKAIYgTQVSAGMRFGMMFETEESGKRRYMGTIVGVSDLDPLRWPGSKWRNLQ 362
                     79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    
MASSTTVEDK VKTVGGGSCG PPLPSNLLEE MKLFKEMQDN SGARKPLHSE LWHACAGPLV  60
SLPQVGSLIY YFPQGHIEQV AISTKRPATS QIPNYPNLPS QLMCQVHNVT LHADKDTDEI  120
FAQMSLQPIK TEKDVFPIPD FGLKASKHPT EFFCKTLTAS DTSTHGGFSV PRRAAEKLFP  180
PLDYTMQPPF QELVVKDLHD NTWTFRHIYR GQPKRHLLTT GWSVFVGSKR LRAGDAVLFI  240
RDEKGQLMIG VRRANRQTTT LPSSVLSADS MHIGVLAAAA HAAANRTPFT VFYNPRACPT  300
EFVIPAGKYW KAIYGTQVSA GMRFGMMFET EESGKRRYMG TIVGVSDLDP LRWPGSKWRN  360
LQVEWDEPGC GDKQSRVSSW EIETPESLFL FPSLTSGFKR PFHPGFFGGE LEWGNSIKRP  420
FIQLPDMGAA NLSYASLPNV WSEQLVKALM RPENMGYPPM LASCPPPPIL QETKANIEAA  480
TLHKPQIVSS QNVSVLNYPS QQLNQREVGN VSGVEQASKT NQPSIDAEKT KPEPLCEPSQ  540
LSQLASAGHC NEERETSNPS NPPSQQSIDA KDNNQKLMQL PAMSSVFQSP LTDVPTSDLS  600
SLNGLFPYMD ASDWLPYSSS TISEVIDPSL PSIGQDIWEQ SQNLRYPAQS DQFGSYSQLS  660
DETNNQSGIY SCIDLDMGNG GNAMVDASIS NAVLNKMCPS KEASLQYSSD CLVGNFSSSQ  720
DLQSQITSAS LAESQAFLQD FPDNNSGGTS SSNVDFDESS LLQNNSWQQV VPPMRTYTKV  780
QKAGSVGRSI DVTSYKDYEE LRFAIERMFG LEGLLNDPRG SGWKLVYVDF ESDVLLVGDD  840
PWEEFVSCVR CIRILSPAEV QQMSEEGMQL LNNNAIPGIS GVA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein