PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035747-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 440aa MW: 47673.4 Da PI: 9.7664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035747-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	201	223	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp+Cg++F+ ++L++H+ + H AUR62035747-RA 201 ACPHCGEVFPKIESLEHHQAVrH 223 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MTTLLGLIFM GILTFIPPES ATNAARTNKP KPKPGRKHKH HHKEENKKQQ TPVKQSTIPK 60 PKQPSSWDQI KNLLTCKQVE GSRVHDPSKG TSSAISSCGS MCSFRDVVHG NTRVVHRSDN 120 SSPESSSLGQ EARLLHRGKT GAGSMSSRSL SGSVRSGSSV TTTHSLSSRG MPLRKLSGCY 180 ECHMIVDPSR YPIIPRTTVC ACPHCGEVFP KIESLEHHQA VRHAVSELGP EDSGRNIVEI 240 IFKSSWLKKD SPMCKIERIL KVQNTQRTIQ RFEDCRDAVK LRANNNTKKN PRCAADGNEL 300 LRFHCTALTC SLGARGSSNL CGSVPGCGVC TIIRHGFQGN KGVRTTASSG RAHDCLDCTD 360 GRRAMLVCRV IAGRVKRSAN DAPAEEEIMS FEGPSGNATS YDSVAGSPGI YSNLEDLVVT 420 NPKAILPCFV VIYKTLTTA*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MTTLLGLIFM GILTFIPPES ATNAARTNKP KPKPGRKHKH HHKEENKKQQ TPVKQSTIPK  60
PKQPSSWDQI KNLLTCKQVE GSRVHDPSKG TSSAISSCGS MCSFRDVVHG NTRVVHRSDN  120
SSPESSSLGQ EARLLHRGKT GAGSMSSRSL SGSVRSGSSV TTTHSLSSRG MPLRKLSGCY  180
ECHMIVDPSR YPIIPRTTVC ACPHCGEVFP KIESLEHHQA VRHAVSELGP EDSGRNIVEI  240
IFKSSWLKKD SPMCKIERIL KVQNTQRTIQ RFEDCRDAVK LRANNNTKKN PRCAADGNEL  300
LRFHCTALTC SLGARGSSNL CGSVPGCGVC TIIRHGFQGN KGVRTTASSG RAHDCLDCTD  360
GRRAMLVCRV IAGRVKRSAN DAPAEEEIMS FEGPSGNATS YDSVAGSPGI YSNLEDLVVT  420
NPKAILPCFV VIYKTLTTA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-160	C2H2 family protein