PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035850-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 262aa MW: 29983 Da PI: 10.044

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035850-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.1	1.7e-31	27	76	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ AUR62035850-RA 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 76 79***********************************************8 PP
2	K-box	100.6	2.2e-33	124	208	16	100
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++qqe+akL++ i++ +++Rh++Ge+L+sLs+keL++Le++Lek++++iRskKnell+++ie +qk+e el+++n+ Lr+++ e AUR62035850-RA 124 YYQQEAAKLRQSIKSQTNTNRHMMGEGLSSLSMKELKNLESKLEKGINRIRSKKNELLFAEIEFMQKREIELHNNNQFLRARISE 208 79******************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MEFPTQVMEE GSPSSQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSSRG RLYEYANHSV KGTIDRYKKA CSDQTGAGSV AEANAQNGKI NVTEFPRPRN 120 VIWYYQQEAA KLRQSIKSQT NTNRHMMGEG LSSLSMKELK NLESKLEKGI NRIRSKKNEL 180 LFAEIEFMQK REIELHNNNQ FLRARISENE RAQQSMSLMP GGSDYDLVPS QSFDSRNYFQ 240 VNALQPNNQY ARQDQTPLQL V*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-110	MIKC_MADS family protein