PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62036035-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 207aa MW: 22930.1 Da PI: 9.0559

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62036035-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde l +++k G g+W++ ++ g+ R++k+c++rw +yl AUR62036035-RA 14 KGAWTKEEDEHLMNYIKANGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	61.2	2.2e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ W++Ia++++ gRt++++k++w++y AUR62036035-RA 67 RGNFTDEEDELIINLHSLLGNK-WSLIAAKLP-GRTDNEIKNYWNTY 111 89******************.*****.**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MGRSPCCEKE HTNKGAWTKE EDEHLMNYIK ANGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIN LHSLLGNKWS LIAAKLPGRT DNEIKNYWNT YIKRKLLNRG 120 IDPQTHRTLN STTTNTAAIT NNTTNTCATT RNVVIGTATS LPVFTKGGSV CLCYNLGFQN 180 KGNQQCHCAM TLATTATAAM CNSGQI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-82	MYB family protein